Journal of Chromosomes

Journal of Chromosomes

Journal of Chromosomes – Aim And Scope

Open Access & Peer-Reviewed

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Aims & Scope

Journal of Chromosomes publishes fundamental research on chromosome structure, dynamics, and function at the molecular and cellular level. We focus on basic mechanisms of chromatin organization, gene regulation, and genome stability across all model organisms.
Chromatin Architecture Chromosome Dynamics Epigenetic Regulation Genome Stability Cytogenetics

Core Research Domains

Tier 1: Priority Areas

Chromatin Structure & Organization

  • Nucleosome positioning and dynamics
  • Chromatin remodeling complexes
  • Higher-order chromatin architecture
  • Nuclear organization and chromosome territories
  • Chromatin accessibility mapping
  • 3D genome organization (Hi-C, ChIA-PET)
Typical Fit:

Molecular mechanisms of ATP-dependent chromatin remodelers in regulating nucleosome positioning during transcription initiation

Chromosome Dynamics & Segregation

  • Centromere structure and function
  • Kinetochore assembly and regulation
  • Sister chromatid cohesion mechanisms
  • Chromosome condensation pathways
  • Spindle checkpoint signaling
  • Telomere maintenance and replication
Typical Fit:

Biochemical characterization of cohesin loading factors and their role in establishing sister chromatid cohesion during S phase

Epigenetic Regulation

  • DNA methylation patterns and enzymes
  • Histone post-translational modifications
  • Chromatin readers, writers, and erasers
  • Non-coding RNA-mediated regulation
  • Epigenetic inheritance mechanisms
  • Environmental effects on chromatin states
Typical Fit:

Structural and functional analysis of histone methyltransferases and their substrate specificity in gene silencing

Genome Stability & DNA Repair

  • DNA damage response pathways
  • Homologous recombination mechanisms
  • Non-homologous end joining
  • Replication stress and fork protection
  • Chromosomal rearrangements at molecular level
  • Meiotic recombination and crossover formation
Typical Fit:

Molecular dissection of RAD51 filament dynamics during homology search and strand invasion in double-strand break repair

Secondary Focus Areas

Tier 2: Cross-Disciplinary Research

Cytogenetic Technologies

Novel karyotyping methods, FISH techniques, chromosome painting, spectral karyotyping, and advanced imaging approaches for chromosome visualization and analysis

Comparative Genomics

Chromosome evolution across species, synteny analysis, karyotype evolution, sex chromosome differentiation, and phylogenetic approaches to understanding chromosomal changes

Chromosomal Basis of Disease

Molecular mechanisms of chromosomal abnormalities in genetic disorders, structural variation analysis, aneuploidy mechanisms, and chromosomal instability at the cellular level

Genome Engineering

CRISPR-based chromosome editing, synthetic chromosome construction, artificial chromosome development, and targeted chromosomal modifications for functional studies

Computational Chromosome Biology

Bioinformatic analysis of chromosome structure, machine learning for chromatin state prediction, AI-driven karyotype analysis, and computational modeling of chromosome dynamics

Transcriptional Regulation

Chromatin-mediated gene expression control, enhancer-promoter interactions, transcription factor binding in chromatin context, and RNA polymerase dynamics on chromosomes

Emerging Research Frontiers

Tier 3: Selective Consideration

Phase Separation in Chromatin

liquid-liquid phase separation mechanisms in chromosome organization, biomolecular condensates at chromosomal loci, and their role in gene regulation and DNA repair

Single-Cell Chromosome Analysis

Single-cell Hi-C, single-cell ATAC-seq, single-cell chromosome conformation analysis, and heterogeneity in chromatin states across cell populations

Chromosome Biology in Development

Chromatin dynamics during differentiation, epigenetic reprogramming mechanisms, X-chromosome inactivation at molecular level, and developmental chromosome remodeling

Extrachromosomal DNA

Molecular characterization of eccDNA formation, extrachromosomal circular DNA in gene amplification, and mechanisms of extrachromosomal element maintenance

Editorial Note: Emerging area submissions undergo additional editorial review to ensure alignment with the journal's molecular and cellular focus. Manuscripts must emphasize mechanistic insights and fundamental biological principles.

Article Types & Priorities

Priority 1: Fast-Track Review

Expedited Processing (10-14 days to first decision)

Priority 2: Standard Review

Regular Processing (21-28 days to first decision)

Rarely Considered

Requires Strong Justification

These article types are only considered when they address significant controversies or provide critical insights into fundamental chromosome biology. Authors should contact the editorial office before submission.

Editorial Standards & Requirements

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Reporting Guidelines

All submissions must follow appropriate reporting standards: ARRIVE for animal studies, MIQE for qPCR, MIAME for microarrays, and discipline-specific guidelines

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Data Availability

Raw data must be deposited in public repositories (GEO, ArrayExpress, PDB, EMDB). Accession numbers required at submission. Code must be available on GitHub or Zenodo

Ethics Compliance

IRB/IACUC approval required for human/animal studies. Ethics statement mandatory. Consent documentation for human samples. Adherence to institutional guidelines

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Preprint Policy

Preprints on bioRxiv, medRxiv, or arXiv are welcomed and do not affect consideration. Authors should disclose preprint DOI at submission

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Reproducibility

Detailed methods required. Reagent identifiers (RRID) mandatory. Statistical analysis must include effect sizes, confidence intervals, and raw data availability

Image Integrity

Original, unprocessed images required. Any adjustments must be applied uniformly. Splicing, duplication, or manipulation results in immediate rejection

Decision Metrics & Performance

18 Days to First Decision
32% Acceptance Rate
45 Days to Publication
Open Access Model